rs2501424 chr1:23872692 T>C
- Sequence
tgaagataactaagaccttcttat[T/C]aggttgttgggaaacatgaagtga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ERR1_HUMAN ARI1B_HUMAN NFIC_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERR1_HUMAN | n/a | 3.64 | 1.50 | n/a | No Hit | |||
| ARI1B_HUMAN | n/a | 1.98 | 2.00 | n/a | n/a | |||
| NFIC_HUMAN | -4.05 | 3.94 | 1.00 | n/a | No Hit | |||
| KDM1A_HUMAN | -2.40 | 3.33 | 1.00 | n/a | n/a | |||
| HTF4_HUMAN | -1.90 | 3.33 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood