rs250759 chr5:76771903 G>A

Sequence
tagttaactttgcaaaactgctat[G/A]taaacatggtagcaatagtttgtg
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.65 -0.41 0.021.00 1.75 -3.09 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  bipolar disorder,  ldl cholesterol,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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