rs252804 chr5:107428405 C>G
- Sequence
catcctagttaaaaatgtacacac[C/G]tgaatacacacacctcccaccaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN EP300_HUMAN TBX21_HUMAN SKIL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | -1.83 | 2.16 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | n/a | 2.49 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | -2.86 | 1.79 | 1.50 | -2.77 | Discordant | |||
| SKIL_HUMAN | -2.04 | 2.53 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -1.63 | 1.81 | 1.25 | n/a | n/a |
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Motif analysis
