rs2529 chr7:64686791 C>T
- Sequence
gtaattttccacccgccactttgc[C/T]ctgtaaagactgctctccctcaca
- ASB in cell types
- T47D (invasive ductal carcinoma) SUP-B15 (Childhood B acute lymphoblastic leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) breast tumor xenograft
- ASB for transcription factors
- FOXA1_HUMAN GCR_HUMAN GRHL2_HUMAN PRGR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.01 | 1.92 | 1.39 | 1.95 | Weak Concordant | |||
| GCR_HUMAN | 0.38 | 2.27 | 1.50 | n/a | No Hit | |||
| GRHL2_HUMAN | 0.12 | 2.33 | 1.50 | n/a | No Hit | |||
| PRGR_HUMAN | 0.21 | 1.85 | 1.30 | n/a | No Hit | |||
| SPT5H_HUMAN | -0.68 | 1.59 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), hdl cholesterol, ldl cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood