rs2535923 chr14:73058557 A>T
- Sequence
aagacctccatcagctcgccgcgc[A/T]gcgcggctgtatttgcggcctgtg
- ASB in cell types
- fetal bone marrow-derived mononuclear cells PC3(bone mets prostate adenocarcinoma) adult erythroblasts CD14+ monocytes
- ASB for transcription factors
- KMT2A_HUMAN RBBP5_HUMAN STAT1_HUMAN HXC5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 2.81 | 0.91 | 1.50 | 0.62 | Weak Discordant | |||
| RBBP5_HUMAN | 1.66 | 0.39 | 1.75 | n/a | n/a | |||
| STAT1_HUMAN | 1.85 | n/a | 3.00 | n/a | No Hit | |||
| HXC5_HUMAN | -1.61 | 2.66 | 2.00 | n/a | n/a | |||
| EP300_HUMAN | 1.51 | -0.16 | 1.33 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood