rs254465 chr5:181188933 T>C
- Sequence
ccctagaccaacgagccggctgtc[T/C]agttgctcgctgaatcttttcatg
- ASB in cell types
- VCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ANDR_HUMAN SUMO2_HUMAN FOXK2_HUMAN TBP_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.02 | -0.67 | 2.33 | n/a | No Hit | |||
| SUMO2_HUMAN | 1.52 | 1.60 | 3.29 | n/a | n/a | |||
| FOXK2_HUMAN | 2.57 | -0.95 | 1.50 | n/a | No Hit | |||
| TBP_HUMAN | 1.58 | -1.35 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood