rs257370 chr5:171661617 G>T
- Sequence
atagttttagatttatggataaat[G/T]gtacatagtacagagagttcttgt
- ASB in cell types
- VCaP (prostate carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.27 | 2.15 | 2.00 | 1.08 | Weak Concordant |
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Motif analysis
