rs257740 chr5:15791476 G>A
- Sequence
gaaatattacatatttcatgcttc[G/A]ggtgccacctagggtccagaaatg
- ASB in cell types
- SK-N-SH (neuroblastoma) SYO-1(Biphasic synovial sarcoma) epithelial cell of prostate heart left ventricle
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.63 | 0.86 | 1.74 | -1.40 | Weak Concordant | |||
| RAD21_HUMAN | 2.90 | -0.14 | 1.90 | n/a | n/a |
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Motif analysis
