ADASTRA v6.1.0
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rs25781
chr5:157220043
A
>
G
Sequence
gttctcttgtctgagccacttgaa[A/G]tcatttctctcctcaccttcttgt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
Th1-cells
ASB for transcription factors
IKZF2_HUMAN
MYB_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN
1.39
0.06
9.7·10
-3
1.00
1.00
n/a
n/a
MYB_HUMAN
3.11
n/a
0.01
1.00
3.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
ldl cholesterol
,
obesity with early age of onset (age >2)
,
paternal transmission distortion
,
transmission distortion
GTEx eQTL
Esophagus_Muscularis
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)