rs2581898 chr8:33513632 A>G
- Sequence
atttgtgggcttgttacttatgat[A/G]acaggtggcctagtttcatggctt
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) TTC-1240 (Rhabdoid tumor of the kidney) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- FOXO3_HUMAN MXI1_HUMAN TCF21_HUMAN SETD7_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXO3_HUMAN | -1.93 | 2.29 | 1.00 | n/a | No Hit | |||
| MXI1_HUMAN | -2.33 | 2.67 | 1.00 | n/a | No Hit | |||
| TCF21_HUMAN | n/a | 1.69 | 3.00 | -1.09 | Weak Discordant | |||
| SETD7_HUMAN | -0.83 | 1.48 | 1.17 | n/a | n/a | |||
| IKZF1_HUMAN | -0.53 | 0.86 | 1.12 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, comorbid depressive syndrome and alcohol dependence, hdl cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood