rs25849 chr16:2215070 C>G
- Sequence
tgaagcgctcgctgcggaaatgcg[C/G]cagaggggagagcagcgcaggcgc
- ASB in cell types
- adult erythroblasts breast tumor HEK293 (embryonic kidney) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- RBM25_HUMAN RBBP5_HUMAN ESR1_HUMAN LMBL2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | -0.64 | 0.51 | 2.00 | n/a | n/a | |||
| RBBP5_HUMAN | 2.98 | -5.32 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.38 | 0.21 | 1.80 | n/a | No Hit | |||
| LMBL2_HUMAN | n/a | 1.91 | 2.00 | n/a | n/a | |||
| BC11B_HUMAN | 1.79 | -1.03 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus