rs258880 chr5:16418771 C>T
- Sequence
ccagctaaatttaatttctcctgc[C/T]tctgctcggcttgtctgggcacct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MTG8R_HUMAN MEF2D_HUMAN IRF9_HUMAN KLF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG8R_HUMAN | 0.36 | -0.36 | 1.00 | n/a | n/a | |||
| MEF2D_HUMAN | 1.90 | -1.68 | 1.00 | n/a | No Hit | |||
| IRF9_HUMAN | -2.76 | 2.85 | 1.00 | n/a | No Hit | |||
| KLF1_HUMAN | 2.54 | -2.26 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Pancreas, Pituitary, Prostate, Testis