rs2588944 chr10:61830954 G>A

Sequence
gccaaaggccaaaccaacccttcc[G/A]ccaccaggtcacagaatgtgcgtc
ASB in cell types
ZNF532-NUT 24335 (NUT-midline carcinoma)
ASB for transcription factors
ZN532_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN532_HUMAN 2.46 -2.18 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  hdl cholesterol,  microalbuminuria,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid

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