ADASTRA v6.1.0
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rs259277
chr19:32670197
T
>
C
Sequence
ccacgcccttaacaagcactgctg[T/C]gcggacagggcctgctgttatcca
ASB in cell types
22RV1 (prostate carcinoma)
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+4 others)
Selected columns
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Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
22RV1 (prostate carcinoma)
-1.03
2.34
1.00
0.02
2.00
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
chronic kidney disease
,
hdl cholesterol
,
serum creatinine
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Tibial
,
Brain_Amygdala
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Caudate_basal_ganglia
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Colon_Transverse
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Testis
,
Thyroid
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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