rs259278 chr19:32670220 C>T
- Sequence
gtgcggacagggcctgctgttatc[C/T]agccccaagtcatctgctttatct
- ASB in cell types
- 22RV1 (prostate carcinoma) VCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| 22RV1 (prostate carcinoma) | -1.24 | 2.21 | 2.00 | |||
| VCaP (prostate carcinoma) | 1.69 | 0.39 | 3.00 |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, cystatin c in serum, hdl cholesterol, parkinsons disease, serum creatinine, triglycerides
GTEx eQTL Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_EBV-transformed_lymphocytes, Heart_Atrial_Appendage, Nerve_Tibial, Testis, Thyroid