rs2593298 chr15:75758507 A>G
- Sequence
ccgcttccggcctcactcgagcag[A/G]ccccgccctcccagaggccgtttg
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) K562 (myelogenous leukemia) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN ETV5_HUMAN KAT8_HUMAN TFE3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.17 | 2.10 | 1.34 | n/a | No Hit | |||
| ETV5_HUMAN | 3.06 | -2.75 | 1.00 | n/a | No Hit | |||
| KAT8_HUMAN | 3.14 | -3.13 | 1.00 | n/a | n/a | |||
| TFE3_HUMAN | 2.76 | -2.50 | 1.00 | n/a | No Hit | |||
| GABP1_HUMAN | 1.55 | -0.21 | 1.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid