rs260509 chr1:2255546 G>A

Sequence
ctgacctcatttcctgtctgtgcc[G/A]ctctgtcctgacctcattttctgt
ASB in cell types
K562 (myelogenous leukemia) HT1080 (fibrosarcoma) VCaP (prostate carcinoma) SK-N-MC (Askin tumor)
ASB for transcription factors
SSRP1_HUMAN GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSRP1_HUMAN 1.39 0.29 7.7·10-40.73 2.00 n/a n/a
GABPA_HUMAN 1.33 -0.24 4.3·10-31.00 1.42 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  aortic valve calcium,  height,  ldl cholesterol,  parkinsons disease,  refractive error,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Whole_Blood

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