rs263438 chr1:86704810 T>G
- Sequence
tccctccacctaccacgtctgccc[T/G]cgccgctctagccctgcgccccag
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TCF21_HUMAN ANDR_HUMAN KDM1A_HUMAN MNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.41 | n/a | 2.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.47 | -0.66 | 1.75 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.55 | -0.15 | 1.40 | n/a | n/a | |||
| MNT_HUMAN | 1.89 | -0.01 | 1.70 | n/a | No Hit | |||
| STAT1_HUMAN | 1.58 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg