rs26538 chr5:115842698 C>T
- Sequence
acgttctgtacagtctctcttctg[C/T]atgtttcgatacgtgacagactgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) K562 (myelogenous leukemia) VCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells lymphoblastoid cell line) | 0.94 | 0.51 | 1.06 | |||
| 22RV1 (prostate carcinoma) | 1.27 | 0.28 | 1.67 | |||
| K562 (myelogenous leukemia) | 0.67 | -0.03 | 2.00 | |||
| VCaP (prostate carcinoma) | 0.40 | 1.12 | 2.00 |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP height, hypertension (early onset hypertension), microalbuminuria, rheumatoid arthritis, sporadic creutzfeldt-jakob disease, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood