rs266771 chr3:186827549 A>G
- Sequence
ccgcccggcgaaggacctcgcggg[A/G]cggggacccctagtgcgcctgcgc
- ASB in cell types
- HepG2 (hepatoblastoma) SUM159PT (Triple negative breast cancer) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN BRD2_HUMAN GABP1_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.51 | 0.15 | 1.20 | -0.36 | Weak Concordant | |||
| BRD2_HUMAN | 1.34 | -0.29 | 1.17 | n/a | n/a | |||
| GABP1_HUMAN | 2.47 | -2.17 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 1.55 | -0.26 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid