rs267307 chr5:115262507 C>T
- Sequence
gaaaaagccggaaactggagatgc[C/T]acagccctcgacctacagccttcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | n/a | 2.94 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP amyotrophic lateral sclerosis (als) age of onset, birth weight, fasting blood glucose, height, hip bone mineral density (bmd), homa-b, neuroblastoma (brain cancer), rheumatoid arthritis, spine bone mineral density (bmd), tourettes syndrome
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Thyroid, Whole_Blood