rs268690 chr19:40444902 C>G
- Sequence
cttaatcctcaggttttctcagca[C/G]gtcctctggtggtcccacctgggt
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) GM19238 (female B-cells lymphoblastoid cell lines) pancreas
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 3.87 | n/a | 3.75 | n/a | n/a | |||
| CTCF_HUMAN | 1.92 | -0.41 | 1.83 | -3.06 | Concordant | |||
| ANDR_HUMAN | 3.43 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
