rs27023 chr5:98604728 G>A
- Sequence
ttagcaccaaaagaattatgaact[G/A]atatttgctcagatttgtgatgct
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.36 | 2.17 | 2.38 | 0.73 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, body mass index (bmi), infant head circumference, ldl cholesterol, microalbuminuria, mitral annular calcium, total cholesterol