rs27162 chr5:34928409 A>C
- Sequence
tgtgtagaatcttcctctggaaaa[A/C]agggaagtgtatgaattctgagta
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) THP-1 (acute monocytic leukemia) macrophages form periferal blood
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 3.02 | 0.53 | 1.50 | -2.68 | Concordant |
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Motif analysis
Genetic associations
GRASP hypertension (early onset hypertension), infant head circumference, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cortex, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid