rs271745 chr1:234487071 A>G
- Sequence
aaatcttgcatgcgttcatggtcc[A/G]gaatgcacaggcagttgcataacc
- ASB in cell types
- A549 (lung carcinoma) GM02255 (Lymphoblastoid Cell Lines) HeLa S3 (cervical adenocarcinoma) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- RAD21_HUMAN TEAD1_HUMAN CEBPB_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.62 | 0.92 | 1.31 | n/a | n/a | |||
| TEAD1_HUMAN | -2.52 | 2.84 | 1.00 | 2.59 | Concordant | |||
| CEBPB_HUMAN | 0.21 | 1.38 | 1.57 | n/a | No Hit | |||
| TCF21_HUMAN | -1.39 | 2.44 | 2.00 | n/a | No Hit |
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Motif analysis
