rs2729789 chr15:63108146 G>A
- Sequence
ttggattcccagaattctccaaat[G/A]tgagtgtccataagtaagcctctc
- ASB in cell types
- liver SK-N-SH (neuroblastoma) SF268 (astrocytoma )
- ASB for transcription factors
- HNF4A_HUMAN TCF21_HUMAN SP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -2.02 | 2.42 | 1.00 | n/a | No Hit | |||
| TCF21_HUMAN | n/a | 2.08 | 2.50 | n/a | No Hit | |||
| SP1_HUMAN | -2.17 | 2.52 | 1.00 | -2.07 | Discordant |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, cystatin c in serum, diastolic blood pressure (dbp), hdl cholesterol, mitral annular calcium, serum creatinine, systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood