rs2730272 chr7:159005931 G>C
- Sequence
agcggggctttgagataagaggac[G/C]gcctcccgcgctccggtgcctgcg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- LMBL2_HUMAN ARI1B_HUMAN SUMO2_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | n/a | 3.93 | 1.50 | n/a | n/a | |||
| ARI1B_HUMAN | n/a | 3.33 | 1.50 | n/a | n/a | |||
| SUMO2_HUMAN | -5.17 | 3.28 | 1.50 | n/a | n/a | |||
| SMCA4_HUMAN | -4.65 | 2.85 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid