rs2730828 chr12:41439360 A>G

Sequence
gtctctaggtggaacactttcctt[A/G]gtttggttgttagagtttgagttc
ASB in cell types
MS-1 (Small cell lung carcinoma) 2588 (Lymphoblastoid Cell Lines)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.43 -0.24 6.0·10-41.00 1.22 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP age at death with kuru exposure,  bipolar disorder,  body mass index (bmi),  college completion,  high myopia,  infant head circumference,  spine bone mineral density (bmd),  years of education
GTEx eQTL Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Nerve_Tibial

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