rs2731710 chr5:172361721 T>C
- Sequence
gagatgtggggtgagtgactgagt[T/C]atttggagtcatggttgcatcagc
- ASB in cell types
- K562 (myelogenous leukemia) HeLa S3 (cervical adenocarcinoma) HCT-116 (colon carcinoma) HEE (human epididymis epithelial cells)
- ASB for transcription factors
- JUND_HUMAN ATF4_HUMAN CEBPG_HUMAN TIF1A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUND_HUMAN | n/a | 2.11 | 1.33 | 4.65 | Concordant | |||
| ATF4_HUMAN | 1.89 | 1.39 | 1.50 | 3.26 | Concordant | |||
| CEBPG_HUMAN | -0.99 | 1.55 | 2.00 | n/a | No Hit | |||
| TIF1A_HUMAN | -0.11 | 2.65 | 2.00 | n/a | n/a | |||
| ATF3_HUMAN | n/a | 1.75 | 3.00 | 5.85 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Whole_Blood