rs2732614 chr17:46286843 C>T
- Sequence
atacagtacaattcctcactgctg[C/T]cctcttgtgcccatttacaatcat
- ASB in cell types
- LNCaP (prostate carcinoma) hepatocytes HCM (cardiac myocytes) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN SMCA4_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.69 | 0.07 | 1.98 | -4.11 | Concordant | |||
| FOXA1_HUMAN | 2.28 | -1.39 | 1.77 | n/a | No Hit | |||
| SMCA4_HUMAN | 2.12 | -0.02 | 1.79 | n/a | n/a | |||
| ANDR_HUMAN | 2.23 | -1.75 | 1.60 | n/a | No Hit | |||
| SPI1_HUMAN | 1.80 | -0.46 | 1.86 | n/a | No Hit |
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Motif analysis
