rs2733107 chr15:79886270 T>A

Sequence
tcccaaacactgtaaagctagatg[T/A]atgcttaagcactgaagttgtcac
ASB in cell types
HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) breast tumor xenograft 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN GATA3_HUMAN TBX3_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.84 -0.31 8.8·10-161.00 1.52 -4.12 Concordant
GATA3_HUMAN 2.90 n/a 1.6·10-41.00 1.50 n/a No Hit
TBX3_HUMAN 2.15 -0.23 8.7·10-41.00 1.00 n/a No Hit
FOXA2_HUMAN 1.28 -0.00 1.1·10-30.89 1.20 n/a No Hit
ANDR_HUMAN 1.24 -0.37 3.0·10-31.00 1.44 n/a No Hit
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  diastolic blood pressure (dbp),  infant head circumference
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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