rs2733577 chr3:14124429 C>A
- Sequence
gcccctctgaggtcagggttcggg[C/A]ttcactgtgaccttggaccagccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) CD34+ hematopoietic stem cells 22RV1 (prostate carcinoma)
- ASB for transcription factors
- NR2C1_HUMAN GABPA_HUMAN ZBT40_HUMAN THA11_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 2.35 | n/a | 1.50 | 0.18 | Weak Discordant | |||
| GABPA_HUMAN | 2.30 | -0.77 | 1.31 | n/a | No Hit | |||
| ZBT40_HUMAN | 3.43 | -3.17 | 1.00 | n/a | No Hit | |||
| THA11_HUMAN | 2.59 | -2.39 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 2.08 | 0.68 | 1.17 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood