rs2733578 chr3:14124894 T>C
- Sequence
tacatttcccagcaggtcgcgcgc[T/C]cctcgacagctctccaggcagtag
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN JUN_HUMAN NRF1_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.29 | 0.09 | 1.83 | n/a | No Hit | |||
| JUN_HUMAN | 1.56 | -0.19 | 3.50 | n/a | No Hit | |||
| NRF1_HUMAN | 1.30 | 0.01 | 1.44 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.45 | n/a | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood