rs2733579 chr3:14125335 C>T
- Sequence
cggctaggcccgcatctccctctg[C/T]tcgccgtgtctgtgccttcgccag
- ASB in cell types
- foreskin keratinocyte 22RV1 (prostate carcinoma) GM12891 (male B- cells lymphoblastoid cell line) breast tumor
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.51 | 0.65 | 1.29 | -2.24 | Concordant | |||
| ANDR_HUMAN | 1.75 | -0.94 | 1.83 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood