rs2733580 chr3:14125372 C>T

Sequence
tgccttcgccagctcatccctctg[C/T]tcatctcgcggcctgtccaggctt
ASB in cell types
22RV1 (prostate carcinoma) foreskin keratinocyte
ASB for transcription factors
ANDR_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.73 0.75 3.0·10-31.00 2.00 n/a No Hit
CTCF_HUMAN 1.56 0.80 0.010.77 1.27 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP simpson-angus scale,  type 2 diabetes
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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