rs273413 chr8:131519547 G>A
- Sequence
tcatcagtgcctcccaatgtctac[G/A]gaacaaagttcaaatgccatagtt
- ASB in cell types
- HepG2 (hepatoblastoma) liver
- ASB for transcription factors
- TBX3_HUMAN FOXA1_HUMAN EP300_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX3_HUMAN | -1.49 | 3.29 | 1.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.51 | 1.93 | 1.17 | 1.88 | Weak Concordant | |||
| EP300_HUMAN | -2.84 | 2.74 | 1.00 | n/a | n/a | |||
| FOXA2_HUMAN | -0.38 | 1.77 | 1.50 | 0.86 | Weak Concordant | |||
| HNF4A_HUMAN | -1.89 | 1.62 | 1.50 | -0.81 | Weak Discordant |
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Motif analysis
