rs2735475 chr17:35931003 A>C

Sequence
ggaagggtagggacgtgtttatag[A/C]agccagcttcatcttcactcctga
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ILF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ILF3_HUMAN 2.63 -4.96 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP obesity with early age of onset (age >2),  refractive error
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Cells_EBV-transformed_lymphocytes,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Whole_Blood

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