rs2735839 chr19:50861367 A>G
- Sequence
gggatctggttctgtcttgtggcc[A/G]agtggaccatggggctatcccaag
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.21 | 3.24 | 1.38 | -2.00 | Weak Discordant |
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Motif analysis
Genetic associations
EMBL-EBI elevated serum prostate-specific antigen levels in healthy men, prostate cancer, prostate-specific antigen levels
GRASP height, infant head circumference, prostate biopsy (having a prostate biopsy), prostate biopsy outcome, prostate biopsy outcome (having a negative prostate biopsy outcome), prostate cancer, prostate cancer (diagnosed after 1992), prostate cancer (non-advanced prostate cancer), prostate-specific antigen (psa), prostate-specific antigen (psa), <=50 years old, prostate-specific antigen (psa), >50 years old, serum prostate-specific antigen (psa)
PheWAS abnormal findings on study of brain, nervous system, abnormal movement, abnormal results of function study of liver, abnormality of gait, acquired deformities of finger, acute posthemorrhagic anemia, adrenal hyperfunction, agorophobia, social phobia, and panic disorder, atherosclerosis of aorta, atrial flutter, calculus of kidney, calculus of ureter, cancer of brain and nervous system, cholelithiasis, cholelithiasis and cholecystitis, chronic lymphocytic thyroiditis, chronic prostatitis, coagulation defects, congenital coagulation defects, congenital musculoskeletal deformities of spine, cystitis and urethritis, diabetes mellitus, diabetic retinopathy, disorders of refraction and accommodation, early or threatened labor, hemorrhage in early pregnancy, elevated prostate specific antigen, epistaxis or throat hemorrhage, esophageal bleeding, esophageal cancer, gastroparesis, hemorrhage in early pregnancy, hemorrhagic disorder due to intrinsic circulating anticoagulants, hyperbilirubinemia, hypermetropia, intracranial hemorrhage (injury), jaw disease nos, joint effusions, keloid scar, liver abscess and sequelae of chronic liver disease, lymphosarcoma, migraine, musculoskeletal symptoms referable to limbs, neck pain, nerve root and plexus disorders, nerve root lesions, noninfectious disorders of lymphatic channels, open wound of eye or eyelid, pancreatic cancer, peritonitis and retroperitoneal infections, peyronies disease, polyneuropathy in diabetes, postlaminectomy syndrome, prostate cancer, psychogenic and somatoform disorders, random mental disorder. ignored for now, schizophrenia, spermatocele, spondylolisthesis, congenital, symptoms involving cardiovascular system, thyroiditis, type 1 diabetes nephropathy, type 2 diabetes, type 2 diabetic neuropathy, unstable angina (intermediate coronary syndrome), vitamin d deficiency