rs2738908 chr3:146529105 A>G

Sequence
gctttaatatctgagaaaatgaaa[A/G]taaataaccatgatctagagtcac
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN n/a 2.33 1.003.4·10-4 3.00 2.62 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP birth weight,  hdl cholesterol change with statins,  mitral annular calcium,  prop taste detection threshold
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Nerve_Tibial,  Pancreas,  Thyroid,  Whole_Blood

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