rs2740792 chr8:90985451 A>G
- Sequence
ggcgcgtggggttggagcggcgcc[A/G]cccagagccggtcgtctagggtag
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) adult erythroblasts MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- REST_HUMAN TYY1_HUMAN RBBP5_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | n/a | 3.52 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.18 | 1.63 | 1.50 | n/a | No Hit | |||
| RBBP5_HUMAN | n/a | 2.36 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.71 | 1.84 | 2.00 | n/a | No Hit | |||
| ILF3_HUMAN | -4.20 | 1.67 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid