rs2741337 chr8:27478381 T>A

Sequence
caccagctgatggaggaatccact[T/A]cacaaatgccagccttggaacaag
ASB in cell types
22RV1 (prostate carcinoma) primary prostate cancer
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.58 -0.52 5.8·10-41.00 1.70 n/a No Hit
FOXA1_HUMAN 1.92 -1.12 0.011.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  ldl cholesterol,  refractive error,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Colon_Sigmoid,  Heart_Atrial_Appendage,  Heart_Left_Ventricle

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