rs2741338 chr8:27478217 T>C

Sequence
gcccctccattagagaaaccagta[T/C]gatttcttcttccaaataaatgca
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.54 -0.47 6.5·10-31.00 2.00 4.34 Discordant
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Motif analysis

ANDR_HUMAN Discordant
ANDR_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  ldl cholesterol,  refractive error,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Colon_Sigmoid,  Whole_Blood

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