rs2742622 chr22:45280000 A>C
- Sequence
ctcctgtttcccctccactgacac[A/C]agcaatggtctctcccaagtgaat
- ASB in cell types
- hTERT-HME1(Telomerase immortalized cell line) HAEC (human aortic endothelial cells) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- BRCA2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRCA2_HUMAN | -0.96 | 1.85 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 0.74 | 2.92 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood