rs2742946 chr1:23559582 T>C
- Sequence
attcaaaatggcccgcctcggccc[T/C]gcccccgccggccctgggcgttca
- ASB in cell types
- K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) brain prefrontal cortex region tissues
- ASB for transcription factors
- OLIG2_HUMAN HDAC1_HUMAN SPT5H_HUMAN ZN148_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OLIG2_HUMAN | -1.10 | 2.54 | 1.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.44 | -0.87 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 0.26 | 1.56 | 1.07 | n/a | n/a | |||
| ZN148_HUMAN | 2.55 | -2.29 | 1.00 | 1.32 | Weak Discordant | |||
| SPI1_HUMAN | 0.80 | 0.46 | 1.25 | n/a | No Hit |
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Motif analysis
