rs274297 chr10:24945023 G>A
- Sequence
ctgcctcctgagctttgcactggc[G/A]cctcctcttgcctgcaacactctt
- ASB in cell types
- SUM159PT (Triple negative breast cancer) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.56 | 0.56 | 1.24 | -2.58 | Concordant | |||
| IKZF1_HUMAN | 2.12 | -0.11 | 1.25 | n/a | n/a | |||
| IKZF2_HUMAN | 1.64 | -1.06 | 1.00 | n/a | n/a |
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Motif analysis
