rs2743987 chr6:8064070 A>G

Sequence
acagaggaaagcggggaaacacga[A/G]gagttgggctggttggttgtggtg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
TYY1_HUMAN ANDR_HUMAN MYCN_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 2.18 -1.70 1.3·10-31.00 2.00 n/a No Hit
ANDR_HUMAN 2.13 -0.49 0.021.00 2.00 n/a No Hit
MYCN_HUMAN -0.94 1.37 1.000.03 1.00 5.07 Concordant
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Motif analysis

MYCN_HUMAN Concordant
MYCN_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Cells_Cultured_fibroblasts,  Testis

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