rs2744078 chr10:42866841 C>T

Sequence
acgaggagttccacgcagtagcca[C/T]gaggtggcaccgcagactcgctac
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) thyroid gland upper lobe of left lung
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN KDM5B_HUMAN EZH2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.92 0.08 1.0·10-811.00 2.13 -5.36 Concordant
RAD21_HUMAN 2.21 0.51 4.2·10-91.00 2.03 n/a n/a
KDM5B_HUMAN 2.17 -1.52 1.2·10-31.00 2.62 n/a n/a
EZH2_HUMAN 2.74 n/a 3.2·10-31.00 1.00 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

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