rs2744708 chr1:22180358 A>G

Sequence
agcagcacacaatagccaaaaagg[A/G]gaagtaacccaagtgtccatcaat
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
PKNX1_HUMAN ARI1B_HUMAN KDM1A_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN -2.33 2.35 1.001.7·10-7 1.25 n/a No Hit
ARI1B_HUMAN -2.05 2.38 1.009.0·10-4 1.00 n/a n/a
KDM1A_HUMAN -1.42 2.42 1.002.1·10-3 1.00 n/a n/a
HDAC1_HUMAN -0.92 2.09 1.007.0·10-3 1.00 n/a n/a
CTBP1_HUMAN -2.66 2.57 1.000.03 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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