rs2745728 chr20:46562725 C>T
- Sequence
tagtgctgtaatgaacgaacaaat[C/T]aatgagtctctgtctcgtctcttc
- ASB in cell types
- K562 (myelogenous leukemia) iPS-derived dermal fibroblasts D54 (H54, Human glioblastoma) breast tumor
- ASB for transcription factors
- RARA_HUMAN ZNF24_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | -0.96 | 2.76 | 1.00 | n/a | No Hit | |||
| ZNF24_HUMAN | -0.21 | 2.15 | 1.88 | 0.35 | Weak Concordant | |||
| CTCF_HUMAN | 1.05 | 0.50 | 1.62 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg