rs2745954 chr1:207890463 G>A
- Sequence
ctgttaggggaaaactgctggggt[G/A]tgtgaccatcatcagaactgggtc
- ASB in cell types
- SEM (childhood B acute lymphoblastic leukemia) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ERG_HUMAN NOTC1_HUMAN RUNX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | 1.10 | -0.26 | 1.44 | n/a | No Hit | |||
| NOTC1_HUMAN | 1.07 | n/a | 2.00 | n/a | n/a | |||
| RUNX2_HUMAN | 2.15 | -3.53 | 1.33 | -0.25 | Weak Concordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GRASP chronic kidney disease, hdl cholesterol, refractive error, total cholesterol change with statins, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Uterus